PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc013001.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 226aa    MW: 25641.8 Da    PI: 8.6739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc013001.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.2e-191055148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg++T+eEd+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc013001.1_g00001.1 10 RGNFTPEEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-16162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26160IPR009057Homeodomain-like
PROSITE profilePS5129427.306559IPR017930Myb domain
SMARTSM007173.8E-17957IPR001005SANT/Myb domain
PfamPF002492.7E-171055IPR001005SANT/Myb domain
CDDcd001674.90E-141255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNYLRPGIKR GNFTPEEDDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLLKKLK  60
SEGIEPKPRK ASRTIPKKKK TAKPDKTGSE KRKKHRPVSK PDVKDRPEMI KVYAPRPVRL  120
STGFARNYSF DDLAASVASS SGNNKAEDNN NTPLNHNGNN NKAEESTGFP WDLYEVGDDL  180
FDDYMDGCDL TARYSLPTSD TLLEKVYDEY LQLLSEDCCL QTCSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1425951108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17793KKKTAKPDKTGSEKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169050.11e-113PREDICTED: myb-related protein 308-like
RefseqXP_019169051.11e-113PREDICTED: myb-related protein 308-like
TrEMBLA0A1S3WYM32e-62A0A1S3WYM3_TOBAC; transcription factor MYB3-like
TrEMBLA0A1U7XK332e-62A0A1U7XK33_NICSY; transcription factor MYB3-like
STRINGXP_009792412.13e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-34myb domain protein 3