PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc013484.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 144aa    MW: 15889 Da    PI: 4.8554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc013484.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-071252751
                             HHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51
                             +S+LC++e+a+++fs++gk +++s+
  Itr_sc013484.1_g00001.1  1 MSTLCGTEIAMVVFSPSGKAFTFSN 25
                             69*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.951127IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-8140IPR002100Transcription factor, MADS-box
PfamPF003191.1E-6223IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSTLCGTEIA MVVFSPSGKA FTFSNPDLNT VLTKYFVQNP TTEANIPELL VRYHREANKN  60
AQINILEAQI DEEMLINQAL REAERGRPSI SSLQLPELQS MKYQMETLYS QVIEKLNQFS  120
MMGAQSQAVP SHFGTNGGAG SSGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191690.18e-48PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A328DKU44e-37A0A328DKU4_9ASTE; Uncharacterized protein
TrEMBLA0A484N9313e-37A0A484N931_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-13AGAMOUS-like 61