PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc013822.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 140aa MW: 15486.8 Da PI: 9.9648

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc013822.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	8e-10	13	44	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W++eEde++++ + +G g+W+++++ g Itr_sc013822.1_g00001.1 13 RGLWSPEEDEKFIKHLATHGYGCWSSVPKLAG 44 789**************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-11	5	42	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	8	41	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.45E-8	8	44	IPR009057	Homeodomain-like
Pfam	PF00249	5.6E-8	13	45	IPR001005	SANT/Myb domain
CDD	cd00167	3.70E-7	16	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MGHHCCGKHK VKRGLWSPEE DEKFIKHLAT HGYGCWSSVP KLAGTSIYLP YPLPPPSSRR 60 QISPDLAFSA PARRLKTKPQ PPPATLFASS TMDSPCIYVF TNYKHLKSKS NQIKDLVSSS 120 ITKAVMYCSS SDQQSLGSSF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17409	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-21	myb domain protein 67