PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc017881.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 196aa    MW: 22327.1 Da    PI: 7.5024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc017881.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.58.8e-0937958128
                      NAM  58 wyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkge.....ktdWvmheyrl 128
                               y+F++  +k + g+r  r + ++g+Wk +   +++ + +++++g  k+L +  k++++kg        +W+m+ey+l
  Itr_sc017881.1_g00001.1   3 RYYFTELTRKCQGGSRFLRrVGDRGTWKGQDAGHPIRV-RDKVMGFTKSLKYEmKKSKNKGGlgdrpGESWLMKEYSL 79 
                              59**************9886888**************9.8899*********953344444344444689******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.0941102IPR003441NAC domain
SuperFamilySSF1019412.48E-143101IPR003441NAC domain
PfamPF023652.2E-4479IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTRYYFTELT RKCQGGSRFL RRVGDRGTWK GQDAGHPIRV RDKVMGFTKS LKYEMKKSKN  60
KGGLGDRPGE SWLMKEYSLS DDYLRDKHVV LKDVVLCRIR RRVVRSTSRS SEPSTLNINE  120
NDTPLEIYNW PEKDDVTVSL PPSQTPTLAA VAAEVSSGVD DAYGGVIVTD NHTLQVDEFN  180
ELDELLRRLE NDDVTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163553.13e-79PREDICTED: NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-06NAC domain containing protein 2