PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc019657.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 85aa    MW: 9457.9 Da    PI: 10.1796
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc019657.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.94.5e-103575142
                     FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                             +fY +YA++ GF+vr s+ k+  rngei++r +vCs++g r 
  Itr_sc019657.1_g00001.1 35 QFYMSYARSGGFDVRHSTVKRG-RNGEIVMRYLVCSRQGLRG 75
                             6****************99887.8999************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-73574IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MELSTVAPEF WTPSVDESLL PFVGCRFQTL TAGIQFYMSY ARSGGFDVRH STVKRGRNGE  60
IVMRYLVCSR QGLRGGGRSK PTPVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167553.11e-28PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-08FAR1-related sequence 7