PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc023973.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 52aa    MW: 6034.81 Da    PI: 7.7985
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc023973.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.63.1e-22152960
                             HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
             HSF_DNA-bind  9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                             +++d++++ +i w ++++sfvv+d+++fa+++Lp++Fkh nf+SFvRQLn+Y
  Itr_sc023973.1_g00001.1  1 MVDDPNTDAIIAWGASKKSFVVWDPHRFATELLPQHFKHANFSSFVRQLNTY 52
                             89************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004478.3E-19152IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-19152IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6152IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-22152IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-63244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-64552IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MVDDPNTDAI IAWGASKKSF VVWDPHRFAT ELLPQHFKHA NFSSFVRQLN TY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-161523687Heat shock factor protein 1
5d5v_B9e-161523687Heat shock factor protein 1
5d5v_D9e-161523687Heat shock factor protein 1
5hdg_A9e-161521768Heat shock factor protein 1
5hdn_A9e-161521768Heat shock factor protein 1
5hdn_B9e-161521768Heat shock factor protein 1
5hdn_C9e-161521768Heat shock factor protein 1
5hdn_D9e-161521768Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192499.13e-31PREDICTED: heat shock factor protein HSF30-like isoform X1
RefseqXP_019192500.13e-31PREDICTED: heat stress transcription factor A-2-like isoform X2
SwissprotQ5Z6A41e-22HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A453SCM34e-24A0A453SCM3_AEGTS; Uncharacterized protein
STRINGTraes_2AS_66F050AC7.14e-24(Triticum aestivum)
STRINGTRIUR3_19594-P16e-24(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.13e-24heat shock transcription factor A7A