PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc028075.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 131aa MW: 14680.8 Da PI: 7.3877

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc028075.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.1	9.6e-25	68	116	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++p+ +AA eLg+ T+LK +CR+ GI+RWPhRk+ksl Itr_sc028075.1_g00003.1 68 TLSREVISSYFHMPVCQAAEELGIEETTLKERCRKVGIPRWPHRKLKSL 116 7999*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.064	51	131	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-21	68	116	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MKLLHPPSLI LLTAQFWDTP FGTVICSCQI VVSSDDTSVE SSEVGEVTIV EDNSSKKEGR 60 GRRPVPSTLS REVISSYFHM PVCQAAEELG IEETTLKERC RKVGIPRWPH RKLKSLEALM 120 KNVQVYSFNS S

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FGD1	1e-18	RKD3_ARATH; Protein RKD3
TrEMBL	A0A1E5W6J3	1e-19	A0A1E5W6J3_9POAL; Protein RKD1 (Fragment)
STRING	Pavir.J13146.1.p	2e-19	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-20	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]