PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc031928.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 242aa    MW: 26981.7 Da    PI: 7.5535
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc031928.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like346.5e-11216240125
                  G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                              k+r++W+peLH+rFv+a+++LGG++
  Itr_sc031928.1_g00001.1 216 KQRRCWSPELHQRFVDALDKLGGAQ 240
                              79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-8213239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAQEFSERNI DLNCEFVVPK SISIALAEIS AIDDPSQKLL KLYSLLQTLE EEAKKIYVIR  60
REVPYATSLL TDEIDMVRGE CMKLKGKEKL PAPAVMEEFL PLKGNSDGGT KRSNEMKSWM  120
SSAALWNHPV TYDNSNSRKS SNQLFPTKPG GVDESIQSFV PHTTMTAEEE AALKRDGLPV  180
PSLSLSSPSV PPSAAVYKTS YHPHSSKTMN KQEQRKQRRC WSPELHQRFV DALDKLGGAQ  240
GL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176330.18e-88PREDICTED: myb family transcription factor EFM-like
RefseqXP_019176331.18e-88PREDICTED: myb family transcription factor EFM-like
RefseqXP_019182597.18e-88PREDICTED: myb family transcription factor EFM-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-14G2-like family protein