PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc033350.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 184aa MW: 21071.5 Da PI: 6.6283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc033350.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.8	2.6e-11	64	139	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y ++++ +GF++rk+k+ + +++ k+ +++++ ++++ ++++ trt C+a+++v+++++g++ev+ + HnH Itr_sc033350.1_g00001.1 64 YAQHSRALGFRTRKAKNLQG-------------TRKSKNLDNQSEvSSSKGKRKNITRTRCEASMRVRLNDEGVYEVAYHITSHNH 136 55555666666666665544.............22233333322233455567899****************************** PP FAR1 88 ela 90 +l+ Itr_sc033350.1_g00001.1 137 PLT 139 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-9	78	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEPENLCSDG NDETDEAFVD EQHLTCPTVL YNEENVMNGE NEVDICGSLE GLKRKTLDEM 60 YELYAQHSRA LGFRTRKAKN LQGTRKSKNL DNQSEVSSSK GKRKNITRTR CEASMRVRLN 120 DEGVYEVAYH ITSHNHPLTR KEWVHLHRSE REITSEKAQA IKTMISSGMR AVDSFRYMVQ 180 EAGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010665579.1	7e-32	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17460	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-10	FAR1-related sequence 5