PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc033582.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 174aa MW: 19364.7 Da PI: 4.7595

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc033582.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.8	4.3e-23	111	159	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s yF++p+ ++A eLg++ T+LK +C + GI+RWPhRk+ksl Itr_sc033582.1_g00001.1 111 TLSREVISIYFHMPVCQVAEELGIGETTLKERCKKVGIPRWPHRKLKSL 159 7899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	94	174	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-19	112	159	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MESPSSSLCN LEYEVTSSSF SNLIDCPVLG YSLWDRHLFM PDSCFEVTPA TELFHDSLSP 60 ISPTDTEQSH NGIQGCSDDT SVESSEVGEV TIVEDSSSKK EGRARRPVPS TLSREVISIY 120 FHMPVCQVAE ELGIGETTLK ERCKKVGIPR WPHRKLKSLE ALMKNVQVYS FNSS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-22	RWP-RK domain-containing protein