PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc034131.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

EIL

Protein Properties

Length: 451aa MW: 49781.1 Da PI: 5.4275

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc034131.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	208.8	4.1e-64	1	219	160	353
TS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHH CS EIN3 160 rrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesf 244 rrfplekgv+pPWWP+G+e+ww++lg + kdq tppykkphdlkkawk++vL avikh+sp+i++ir l++qsk+lqdkm+akes+ Itr_sc034131.1_g00001.1 1 RRFPLEKGVPPPWWPNGNEEWWPQLGlMNKDQATPPYKKPHDLKKAWKIGVLIAVIKHISPDISKIRMLVMQSKCLQDKMTAKESA 86 89**********************9999999************************************************* PP HHHHHHTTTTT-S--XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.........................XX CS EIN3 245 allsvlnqeekecatvsah.ssslrkqspkvtlsceqkedvegkkeskikhvqavktta.........................gf 304 ++l+++nqee+++++ +++ s+++ +s + +++++k+dv+g ++ +vq +k ++ g+ Itr_sc034131.1_g00001.1 87 TWLAIVNQEEALARDRCPSlSPTVGAGSGMFSVNDSHKYDVDGVDNDPEFDVQVQKPNNvdllstgveifnnavtdsiqddvitGL 172 ***************8889999************6666666999999999999********************9 PP XXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 305 pvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 ++ rkrk p+++ + + ++tc+ q+++se l+f+ + +++ ++ Itr_sc034131.1_g00001.1 173 DFSRKRK--PVDELPILLDHRIYTCEFVQCPYSELGLGFEHRLARDIHQ 219 99998..6666666666678****************999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.1E-44	1	96	No hit	No description
Gene3D	G3DSA:1.10.3180.10	3.0E-52	1	104	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	7.06E-44	1	99	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
RRFPLEKGVP PPWWPNGNEE WWPQLGLMNK DQATPPYKKP HDLKKAWKIG VLIAVIKHIS 60 PDISKIRMLV MQSKCLQDKM TAKESATWLA IVNQEEALAR DRCPSLSPTV GAGSGMFSVN 120 DSHKYDVDGV DNDPEFDVQV QKPNNVDLLS TGVEIFNNAV TDSIQDDVIT GLDFSRKRKP 180 VDELPILLDH RIYTCEFVQC PYSELGLGFE HRLARDIHQL TCPYRNSAQF GVSNSHMYEV 240 KPVAFTQQFV QPKTAATTAA ATAVAAPPEN PTPPSFNLSG PGVPENGQRM INDLMSFYDI 300 NSPGNKISNT RTPGPAKGQP LQQIQQTNMN EVQPVVFTEQ FVQPKAATTI DTAVTVPPVN 360 PSPSLPSFNL SGSGVPQDGQ RMINDFISFY DSNTPGNTIS NTRNAGPAKD QPLQQIQQPN 420 IQCQQGGFLQ DHEGIIFQDS NISSTLPMFT S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

RRFPLEKGVP PPWWPNGNEE WWPQLGLMNK DQATPPYKKP HDLKKAWKIG VLIAVIKHIS  60
PDISKIRMLV MQSKCLQDKM TAKESATWLA IVNQEEALAR DRCPSLSPTV GAGSGMFSVN  120
DSHKYDVDGV DNDPEFDVQV QKPNNVDLLS TGVEIFNNAV TDSIQDDVIT GLDFSRKRKP  180
VDELPILLDH RIYTCEFVQC PYSELGLGFE HRLARDIHQL TCPYRNSAQF GVSNSHMYEV  240
KPVAFTQQFV QPKTAATTAA ATAVAAPPEN PTPPSFNLSG PGVPENGQRM INDLMSFYDI  300
NSPGNKISNT RTPGPAKGQP LQQIQQTNMN EVQPVVFTEQ FVQPKAATTI DTAVTVPPVN  360
PSPSLPSFNL SGSGVPQDGQ RMINDFISFY DSNTPGNTIS NTRNAGPAKD QPLQQIQQPN  420
IQCQQGGFLQ DHEGIIFQDS NISSTLPMFT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	3e-54	1	105	30	133	Protein ETHYLENE INSENSITIVE 3
4zds_B	3e-54	1	105	30	133	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197784.1	1e-164	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_019197785.1	1e-164	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	3e-90	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A068VEZ0	1e-140	A0A068VEZ0_COFCA; Uncharacterized protein
STRING	XP_009801714.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-76	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]