PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc034882.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 213aa    MW: 23322.9 Da    PI: 11.1862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc034882.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042107129123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ Cg+ F+r+  L  H+r H
  Itr_sc034882.1_g00001.1 107 HICTMCGRWFNRRQALFGHMRHH 129
                              68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.34E-6104130No hitNo description
PROSITE profilePS5015710.18107129IPR007087Zinc finger, C2H2
SMARTSM003550.0054107129IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-5107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
GGGGGGGAFL RFKLLEGRNE VTLMISEWWR GINILHSTCS PPALTLHTTR VSILSNRITQ  60
KVGVAFQKCL ISLMEVSALK QFKMSRNNAN GSSSFNSLSP VQPQQNHICT MCGRWFNRRQ  120
ALFGHMRHHG SFGWRITYPY LFNRGHLANV QPRPGIPAVG SQVAAVPPPP IAAPPPPADN  180
ALLAQPEVPA GLLNLNELRH YRVPDLNFPP PPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328DQD69e-17A0A328DQD6_9ASTE; Uncharacterized protein