PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc035384.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 161aa    MW: 18853.8 Da    PI: 10.5973
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc035384.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.6e-1467100134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs+C++t+Tp+W +gp g  tLCn+CG++yr  +
  Itr_sc035384.1_g00001.1  67 CSHCKATETPQWCKGPMGLNTLCNPCGVRYRTGR 100
                              *******************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-1359122No hitNo description
SMARTSM004013.0E-1161115IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.1346197IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-126298IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.50E-1166113No hitNo description
PfamPF003204.0E-1267100IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MPNLYFDFII PIRKRTKRAR ISKWRQSPIY FDFIVPIRKR TERARSASNP WIRNGVGVPS  60
SKEFRECSHC KATETPQWCK GPMGLNTLCN PCGVRYRTGR LFPEYRPANS PTFVPTLHFS  120
SHRKAVEMRR KGDEEASMVE EDSVKRDAVE EMKKKMEEAK K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197212.15e-59PREDICTED: GATA transcription factor 11-like
TrEMBLA0A103Y0C41e-34A0A103Y0C4_CYNCS; Uncharacterized protein
TrEMBLA0A2J6K5W31e-34A0A2J6K5W3_LACSA; Uncharacterized protein
STRINGXP_004142426.17e-32(Cucumis sativus)
STRINGXP_004166767.17e-32(Cucumis sativus)
STRINGXP_009621793.15e-32(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-32GATA transcription factor 11