PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc035396.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 259aa    MW: 29249.3 Da    PI: 9.0482
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc035396.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-184893148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg++++eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc035396.1_g00001.1 48 RGNFSPEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 93
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-112054IPR009057Homeodomain-like
PROSITE profilePS500904.1472942IPR017877Myb-like domain
SuperFamilySSF466891.11E-202999IPR009057Homeodomain-like
PROSITE profilePS5129426.3484397IPR017930Myb domain
SMARTSM007171.4E-164795IPR001005SANT/Myb domain
PfamPF002491.1E-164893IPR001005SANT/Myb domain
CDDcd001679.88E-135093No hitNo description
Gene3DG3DSA:1.10.10.603.1E-235593IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
YFLNLLKHKE STVVSTEAQI HSHRPCLLRC GKSCRLRWMN YLRPGIKRGN FSPEEEDLIV  60
RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN THLLKKLKSS GIEPRPPRKI VTSKKKATIP  120
KIVASKKPAN NNSRNKKLQR KEISDDNQRC YKVYAPKAIR LSSRNNSVED IAGSVSSSSG  180
EVENKGIIDG SSSFIPWNLY ELRDDFCAEV LTAAGDDLSP QCALPVGSDD CLLDKVYDEY  240
LQLLSENCFL EDDPFGANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18299740108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125140KKPANNNSRNKKLQRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200152.11e-118PREDICTED: myb-related protein Myb4-like isoform X1
RefseqXP_019200153.11e-118PREDICTED: myb-related protein Myb4-like isoform X2
TrEMBLA0A328E3D03e-83A0A328E3D0_9ASTE; Uncharacterized protein
STRINGXP_009602702.12e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-43myb domain protein 6