PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc036735.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 104aa    MW: 12061 Da    PI: 10.2042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc036735.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036829122
                             EEETTTTEEESSHHHHHHHHHH CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                             y C+ C+k+F r  +++ H   
  Itr_sc036735.1_g00001.1  8 YGCQFCPKVFDRLTSYTGHVGI 29
                             67**************999755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MIMKDGKYGC QFCPKVFDRL TSYTGHVGIH LRRNLKCFST SIEAAPLAAH TYYGKDPRRA  60
RVRLRPRAYS RVDNLRHLSE IVLRDEEEEL AKLRLLSEVS GRLI