PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc038300.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 176aa MW: 19799.5 Da PI: 10.155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc038300.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.2e-09	2	72	31	91
FAR1 31 rtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 r +vCs++g + ++ + k+rr++ ++ + C ak+ ++++++g+++v+ +e++H+H+l++ Itr_sc038300.1_g00001.1 2 RYLVCSRQGVKGGVSRPppgvngddggKAKQRRRQISNWVRCLAKIFLRRDNTGEFVVSIFEEKHTHPLCS 72 5689****9999988999**9999999**********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-6	3	71	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MRYLVCSRQG VKGGVSRPPP GVNGDDGGKA KQRRRQISNW VRCLAKIFLR RDNTGEFVVS 60 IFEEKHTHPL CSESSRQFMR INRSLDSTQQ AFIASCLKAN IGTSQSFRLC KELMGTYGNI 120 GATSVDFHNF KRDLQSYVGR DEENRLALLF CADPVARANF LRFGDVISFD APTART

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167553.1	8e-65	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-06	FAR1 family protein