PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc045158.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 99aa    MW: 11318.8 Da    PI: 8.0969
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc045158.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.8e-16739234
                     GATA  2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                             ++C++t+Tp+WR+gp g  tLCn+CG++y   +
  Itr_sc045158.1_g00001.1  7 RHCKATETPQWRKGPMGLNTLCNPCGIRYSTGR 39
                             69***************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-8454IPR000679Zinc finger, GATA-type
PfamPF003203.1E-13738IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-12863No hitNo description
CDDcd002027.02E-12852No hitNo description
PROSITE profilePS501149.302835IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12837IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MGFHHPRHCK ATETPQWRKG PMGLNTLCNP CGIRYSTGRL FPEYRPANSP TFVPTLHFSS  60
HRKVGEMRRK GVEEAAMVDE DSVKTDAEEE KKTMEEAKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197212.13e-40PREDICTED: GATA transcription factor 11-like
SwissprotQ9SV308e-29GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A068UF309e-31A0A068UF30_COFCA; Uncharacterized protein
STRINGXP_006485699.12e-29(Citrus sinensis)
STRINGXP_006436435.12e-29(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-31GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]