PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc046742.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21342.6 Da    PI: 10.2472
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc046742.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i n+s+r++++ kR+ g+lKK +EL +LCda va+i++ss
  Itr_sc046742.1_g00001.1 11 IVNESKRKTSYRKRKRGLLKKINELTILCDAVVAMIMYSS 50
                             789***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-20183IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.348150IPR002100Transcription factor, MADS-box
CDDcd002662.47E-21286No hitNo description
PRINTSPR004047.0E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MARRRLRLAY IVNESKRKTS YRKRKRGLLK KINELTILCD AVVAMIMYSS FEQGPVIWPP  60
TVERFEELIV RFLNLPDEQQ TRRMMSNESL NTGRIEKLNT QLLNLKNKNR KREMNELMHQ  120
ILTGEQSIDS LNFTDLNDIG WVLNTNLADV GMRFRELERD SSPTLAPTAS PSVLGPGTSN  180
VDVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRRLRLAYIVNESKRKTSYRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170462.13e-82PREDICTED: agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-19AGAMOUS-like 80