PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc047470.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 102aa MW: 11317.2 Da PI: 9.7555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc047470.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.4e-06	59	85	1	27
CHHHHHHHHHHHHHHHHHHHHHHHCTS CS HLH 1 rrrahnerErrRRdriNsafeeLrell 27 +r +h e+Er+R +++ + ++ Lr+ll Itr_sc047470.1_g00001.1 59 KRIMHREIERQRCQEMATLYASLRSLL 85 799**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.22E-5	51	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MPCLAKSAHH HDFAATAAAA AAAVTASSPK KRRRKEKTLA ACTDDVAAAA KSDENHKLKR 60 IMHREIERQR CQEMATLYAS LRSLLSLEYV KVINHCCCLL LR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KKRRRK
2	31	36	RRRKEK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200203.1	8e-23	PREDICTED: transcription factor bHLH36-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA22833	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-10	bHLH family protein