PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc048482.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 179aa    MW: 20877.1 Da    PI: 7.1963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc048482.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.54.8e-481178170346
                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253
                              e+++vpfefn+ +ak++e++++++L++++gE+l+Vn+ +ql +lld++v ++s  +rd+vLkl+ +l P+v+++   ++ +ns+ F
  Itr_sc048482.1_g00001.1   1 EKFNVPFEFNA-IAKQWETITVDDLKINEGEVLVVNCLYQLRKLLDDTVVVNSlsPRDTVLKLIHKLHPDVFIHGILNSACNSPLF 85 
                              589********.7************************************999998******************************* PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                rf  al++ysa+fd+le+++pre +er+ +E  ++g++++n++ace +er+er et++ W++r ++aGF ++pl+ +++k   +
  Itr_sc048482.1_g00001.1  86 TSRFRAALSHYSAVFDMLEVTIPREVHERMLIESYIFGQQAMNAIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMH 171
                              ***********************************************************************************999 PP

                     GRAS 340 llrkvks 346
                               l+++++
  Itr_sc048482.1_g00001.1 172 TLKRYHK 178
                              9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.0321179IPR005202Transcription factor GRAS
PfamPF035141.7E-451178IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
EKFNVPFEFN AIAKQWETIT VDDLKINEGE VLVVNCLYQL RKLLDDTVVV NSLSPRDTVL  60
KLIHKLHPDV FIHGILNSAC NSPLFTSRFR AALSHYSAVF DMLEVTIPRE VHERMLIESY  120
IFGQQAMNAI ACEDTERVER PETYKMWQAR NTRAGFLQLP LNREIVKMSM HTLKRYHKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-143162174329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171942.11e-117PREDICTED: scarecrow-like protein 14 isoform X3
SwissprotP0C8833e-63SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A0V0HMR96e-80A0A0V0HMR9_SOLCH; Putative ovule protein (Fragment)
TrEMBLA0A1S4D6552e-78A0A1S4D655_TOBAC; scarecrow-like protein 14
STRINGXP_009611175.13e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-65GRAS family protein