PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc050949.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 92aa    MW: 10462.8 Da    PI: 9.6882
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc050949.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP30.41.3e-097192324
                      TCP  3 gkkdrhskihTkvggRdRRvRl 24
                              kkdrhskihT+ g+RdRR+Rl
  Itr_sc050949.1_g00001.1 71 SKKDRHSKIHTAHGPRDRRMRL 92
                             69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-87192IPR005333Transcription factor, TCP
PROSITE profilePS5136914.5517292IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MQYEDEHVLL QHIHTLLLQQ EDSFAAAAAA AESAIILNSN EQYFDNSSST MMKNNSNNNN  60
VVVVGKKKKC SKKDRHSKIH TAHGPRDRRM RL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189667.14e-37PREDICTED: transcription factor TEOSINTE BRANCHED 1-like isoform X2