PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc056773.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 142aa MW: 15571.7 Da PI: 8.5211

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc056773.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.4	1.2e-20	17	60	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ie ksn +vtfskRr+g++KKA+ LS+LC+a+va+i+fs+ g+ Itr_sc056773.1_g00001.1 17 KIERKSNLEVTFSKRRAGLFKKASVLSTLCGADVAIIVFSPAGN 60 599**************************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.194	8	59	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-25	8	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.74E-31	9	78	No hit	No description
SuperFamily	SSF55455	1.83E-23	9	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-15	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.6E-22	17	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-15	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-15	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
AMAARTSRGR QRIEMVKIER KSNLEVTFSK RRAGLFKKAS VLSTLCGADV AIIVFSPAGN 60 KVFSFGHPTV EAVVERFLGE DNPAPVNETG GGALATEQFV EAQRNARVQE LNSELTRLEA 120 VFEFEKKRGE AIDGFVEANR EA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176892.1	2e-73	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	2e-39	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A1R3IGJ3	1e-45	A0A1R3IGJ3_COCAP; Transcription factor, MADS-box
STRING	Solyc01g106730.1.1	4e-46	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-42	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]