PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc060216.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 84aa    MW: 8460.52 Da    PI: 3.9504
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc060216.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.21.7e-075283233
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-H CS
             HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvlde 33
                             Fl+k+  +++d++++ +i w ++++sfvv+d+
  Itr_sc060216.1_g00001.1 52 FLSKTLAMVDDPNTDAIIAWGASKKSFVVWDP 83
                             9********************999******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-84783IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-74883IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-55284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MVAESSGIDS GGGGVTVKVE AEVVVVDECD DGGNGGLISM EGVKGVGGPV PFLSKTLAMV  60
DDPNTDAIIA WGASKKSFVV WDPH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192499.15e-23PREDICTED: heat shock factor protein HSF30-like isoform X1
RefseqXP_019192500.15e-23PREDICTED: heat stress transcription factor A-2-like isoform X2
TrEMBLA0A1S4CRR39e-16A0A1S4CRR3_TOBAC; heat stress transcription factor A-7a-like
STRINGXP_009606363.11e-16(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.13e-14HSF family protein