PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc064431.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 112aa MW: 13389.6 Da PI: 8.5131

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc064431.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.9	1.1e-12	14	43	14	43
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43 +R+++++K A+ELSvLC++ev + +fs++ Itr_sc064431.1_g00001.1 14 ERRKETLFKQAKELSVLCEVEVGIAMFSPS 43 58**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.521	1	43	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.009	2	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-14	5	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-11	7	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
LMMMTESERK RRIERRKETL FKQAKELSVL CEVEVGIAMF SPSEGGGPIV WPSLEEARKR 60 LLEFWALPEV ERVKKMVTHE RVLTDWVNDE MRKIQKRENE VERKEMNVVM NQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171202.1	2e-42	PREDICTED: agamous-like MADS-box protein AGL92
TrEMBL	A0A328E579	2e-25	A0A328E579_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31640.1	5e-13	AGAMOUS-like 92