PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc068451.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 112aa    MW: 13289.6 Da    PI: 9.8754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc068451.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.3e-1425541443
                             HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43
                              kR+++++K A+ELSvLCd+ev + +fs++
  Itr_sc068451.1_g00001.1 25 EKRKETLFKQAKELSVLCDVEVGIAMFSPS 54
                             6***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-5664IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.24E-151597IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.0821754IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121854IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRGIQVGRHF TLMMMTESER KRRIEKRKET LFKQAKELSV LCDVEVGIAM FSPSEGGVPI  60
VWPSLEDARK KLLEFWALPE VERARKMVTH ERVLTDWVND EMRKMQKREN EV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127RRIEKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171202.12e-40PREDICTED: agamous-like MADS-box protein AGL92
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.14e-14AGAMOUS-like 92