PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00003.440
Common NameJCGZ_25924
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 618aa    MW: 68686.5 Da    PI: 6.0823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00003.440genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06281301526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+++++ G C++Gd C ++Hg
  Jcr4S00003.440 281 PCPDHRK-GVCRHGDFCEYSHG 301
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127964.3E-983156IPR020683Ankyrin repeat-containing domain
CDDcd002047.96E-1387177No hitNo description
PROSITE profilePS5029715.61887181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01887117IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-1587169IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.68E-1587180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0086122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.087122157IPR002110Ankyrin repeat
SMARTSM003560.015276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.967281303IPR000571Zinc finger, CCCH-type
SMARTSM0035616311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKHVYRPKSE EVEETSSIFY PETNSFNIDM NTSVGTVETE YSFSMLLECA ADNDVEGFKR  60
SVFDESEVRQ VGLWYVHHRV SKKGVLEHRT PLMVAAKYGS ADVMKLILSL PEVDVNFSCG  120
SDNSSALHCA ASGGSSNAID VIKLLLLAGA DPSSTDANGH RPVDIIVAYP NFPNLKIALE  180
KLLKNIGSLC QWELQFSTSS LNSSSPPISW TSEEGKKDCV DPSFPDTKDD AYANDKFWMF  240
SFKIQPCSRA YFHDWTECPF AHPGENARRR DLRRFHYSCV PCPDHRKGVC RHGDFCEYSH  300
GIFESWLHPA QYRTRLCRDG SSCSRRVCFF AHTNEQLRPV SASTGAAVPS LQAPARDFTA  360
AFNLFSGALP AVSAVPPFPF TPPMSPSGND LNLLMAWPQQ NISNLEISGN NLQASRLRTT  420
SNAREIPSEE LNTIQYFELL QQHLLNDLSY ISQPHRNSST NLSACFKQLN PSNPDRLWSA  480
EVSSPQSTYR LSVAHAFSPS YKSAVINKSQ LSSPRMMSPH INESISTSSS HLSALLYHDK  540
QESELGSLNS GELGFNLTYN LGSNGLNSWS KQDPVNGNVD WSVEADEVGR RQKSSNGQYG  600
EEPDVSWIQS VLKDPSET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540778.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067JH090.0A0A067JH09_JATCU; Uncharacterized protein
STRINGXP_002513504.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1776055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-175CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]