PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00007.210

Common Name

JCGZ_02073, LOC105631885

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 752aa MW: 86925.5 Da PI: 8.4234

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00007.210	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.3e-20	35	109	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA++vGF++r+ + ++s+++g++ +r+fvC keg++ + +rtgC a ++v+++++gkw++++++++HnHel Jcr4S00007.210 35 QFYGAYATRVGFRIRTGQLYRSRTDGTVSSRRFVCAKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVIDQIHKDHNHEL 109 6*************************************876..............589*************************98 PP
2	FAR1	67.9	2.6e-21	189	263	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l Jcr4S00007.210 189 QFYQMYADSAGFRIRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWMVDRLQKDHNHDL 263 6*************************************999..............4899************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-16	35	109	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.5E-17	189	263	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-29	364	456	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	638	674	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-7	649	676	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.4E-7	650	671	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MIRVNNSRIN GEDEGESRLE PCMGLEFVSA DNARQFYGAY ATRVGFRIRT GQLYRSRTDG 60 TVSSRRFVCA KEGFQLNSRT GCPAFIRVQR RDSGKWVIDQ IHKDHNHELG LEDESHPPIL 120 QKRAPKATKS SAGVSQRPKF NLIENIDDVH PCTSGVISVK RLKRGGDGGQ FGAEPYAGLA 180 FNSADEAYQF YQMYADSAGF RIRIGQLFRS KNDGSITSRR FVCSKEGFQH PSRVGCGAFM 240 RIKRQESGTW MVDRLQKDHN HDLELQSGTQ KKICNTSKKF IDDINDGLDL SDLDKINYGG 300 PIRRNRVNNI GSDWYRLLLD YFQTRQAEDT AFFYSVEVDN GSCMSMFWAD GRSRFSCSQF 360 GDAVVFDTSY RKSNYQVPFA TFVGVNHHKL PVLLACALIA DESEESFTWL FQTWLRAMSG 420 CRPKSIIADQ DMAIQHAIAK VFPMTHHRFS TWQIRAKERE NLRSMTDEFK YEYEKCIYQS 480 QTSVEFNTMW SALINKYGLK ENPWLKEMYE KRESWVPLYL RGKFCAGVPI NESLESFFGT 540 VSIAQTPITE FISRYEQGLA RRREEERKED FNCYNLQVFL QTKEPVEEQC RRVYTLTVFK 600 ILQNELLQCY NYLGIKTYEE GTISRYSVRR CGNEIEKHAV TFSASNLNVC CSCLMFEFEG 660 ILCRHILRVF NLLDIREIPS RYILHRWTRN AEYGTVQDIE SGVSAQELKS LIVWSLRETA 720 CKYIEAGTTS LEKFKLAHEI MREGGIKLRW QR

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MIRVNNSRIN GEDEGESRLE PCMGLEFVSA DNARQFYGAY ATRVGFRIRT GQLYRSRTDG  60
TVSSRRFVCA KEGFQLNSRT GCPAFIRVQR RDSGKWVIDQ IHKDHNHELG LEDESHPPIL  120
QKRAPKATKS SAGVSQRPKF NLIENIDDVH PCTSGVISVK RLKRGGDGGQ FGAEPYAGLA  180
FNSADEAYQF YQMYADSAGF RIRIGQLFRS KNDGSITSRR FVCSKEGFQH PSRVGCGAFM  240
RIKRQESGTW MVDRLQKDHN HDLELQSGTQ KKICNTSKKF IDDINDGLDL SDLDKINYGG  300
PIRRNRVNNI GSDWYRLLLD YFQTRQAEDT AFFYSVEVDN GSCMSMFWAD GRSRFSCSQF  360
GDAVVFDTSY RKSNYQVPFA TFVGVNHHKL PVLLACALIA DESEESFTWL FQTWLRAMSG  420
CRPKSIIADQ DMAIQHAIAK VFPMTHHRFS TWQIRAKERE NLRSMTDEFK YEYEKCIYQS  480
QTSVEFNTMW SALINKYGLK ENPWLKEMYE KRESWVPLYL RGKFCAGVPI NESLESFFGT  540
VSIAQTPITE FISRYEQGLA RRREEERKED FNCYNLQVFL QTKEPVEEQC RRVYTLTVFK  600
ILQNELLQCY NYLGIKTYEE GTISRYSVRR CGNEIEKHAV TFSASNLNVC CSCLMFEFEG  660
ILCRHILRVF NLLDIREIPS RYILHRWTRN AEYGTVQDIE SGVSAQELKS LIVWSLRETA  720
CKYIEAGTTS LEKFKLAHEI MREGGIKLRW QR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069481.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X2
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A067L6E7	0.0	A0A067L6E7_JATCU; Uncharacterized protein
STRING	cassava4.1_001903m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Entrez Gene	105631885

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]