PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00012.190
Common NameJCGZ_05859, LOC105650651
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 296aa    MW: 31991.8 Da    PI: 7.9685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00012.190genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10655347
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47
                     +W++eE + + +a++ +G +      +W+++a +++  ++ +++k ++q +
   Jcr4S00012.190  6 SWSKEENKAFENAIATYGVEdddskeQWEKVALMVP-SKSIEELKQHYQLL 55
                     5***********************************.***********965 PP
2Myb_DNA-binding391.9e-12132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   Jcr4S00012.190 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 176
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.674159IPR017884SANT domain
SMARTSM007171.5E-7358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-4653IPR009057Homeodomain-like
CDDcd001678.35E-9656No hitNo description
SuperFamilySSF466891.86E-10662IPR009057Homeodomain-like
PfamPF002497.6E-8654IPR001005SANT/Myb domain
PROSITE profilePS5129417.282124181IPR017930Myb domain
SuperFamilySSF466896.9E-17127182IPR009057Homeodomain-like
SMARTSM007172.3E-10129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-17129179IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.3E-11130175IPR009057Homeodomain-like
CDDcd001679.73E-10132177No hitNo description
PfamPF002497.2E-11132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASAISWSKE ENKAFENAIA TYGVEDDDSK EQWEKVALMV PSKSIEELKQ HYQLLVEDVS  60
AIEAGNIPLP TYVGEEATSS SSKDSHGLSG ALAADKRSNC GYGSRFLGLD NSSSHGGKGG  120
SSSDQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNF VISRTPTQVA SHAQKYFIRL  180
NSMNRDRRRS SIHDITSVNN GNVSSQQAPI TGQQANTNPA STAAAMGHGV KHRVQPHMPS  240
LGMYGAPMGH PVAAPPGHMA SAVGTPVMLP PPGHHPHPPY VVPVAYPMAP PQTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-14272673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092968.10.0transcription factor MYBS1
SwissprotB8A9B23e-89MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH593e-89MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A067JJD30.0A0A067JJD3_JATCU; Uncharacterized protein
STRINGXP_002511974.11e-165(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-76MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]