PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00013.80
Common NameJCGZ_12285, LOC105639611
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 815aa    MW: 88466.9 Da    PI: 7.1565
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00013.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-095846211954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Jcr4S00013.80 584 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 621
                    664459******************************88 PP
2BELL94.11.3e-304615151872
           BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  Jcr4S00013.80 461 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 515
                    7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-66377513IPR006563POX domain
PfamPF075262.2E-40382512IPR006563POX domain
PROSITE profilePS5007112.568562625IPR001356Homeobox domain
SMARTSM003891.2E-9565629IPR001356Homeobox domain
CDDcd000864.45E-13565626No hitNo description
SuperFamilySSF466893.94E-17567632IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28568631IPR009057Homeodomain-like
PfamPF059204.2E-18582621IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MIDHHQYQEI DIMGIATPPL LPPILSHSKT HHHHQSSSIT PLALLQQQQQ QQQSNSMSQD  60
YHQAAGIFSF SNGFERSQEH HHHHQQQQQN HLAQQIRRDK LRIQHGYDPP TGSLVGIEDE  120
ESGSLAVYEG AGMLSEMFNF PTASGPATAA ELLDQPLQSN YRTAAAAATQ PRQQQPVNTS  180
EWYSNNRQAM VGGLGSLGDT KNHNNQHHHQ ISGINADSAA AMQLFLMNPQ PRSPSPPPAT  240
SSTLHMLLPN PSTSLPGYST TGGAFGANSE ISPPQFTWVP DNTHEGGNTN PSEIGSVVEG  300
QGLSLSLSST LQHLEAAKAE ELRMGDGGLL YYNQGGGSSS TAAQYYKNLS GQHQSTLHLQ  360
PGIGQNHQVH VGFGSSLGAV NVLRNSKYVK AAQELLEEFC SVGRGQFKKS KFSRQNTNPN  420
SNTAGGGGGI GSGGTTGGGG SSTKDFPPLS AADRIEHQRR KVDRRYNHYC EQMQMVVNSF  480
DLVMGFGAAV PYTALAQKAM SRHFRCLKDA IAAQLKHSCE LLGEKDGAGT SGITKGETPR  540
LRMLEQSLRQ QRAFHQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL  600
ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEEG GNIEDKERKQ SINSKNNTYS  660
NNNSGLAQTP TPTTTSTATP NITPTTQSLS ATPTTPPAKR SENTNENDHS HLLATASAAT  720
TIVTPTIEAA PPILTPHGQA FHDLADETCR RGSMIAGDYG TTATVSAGGA EHIGSTPIRF  780
GTTAAGDVSL TLGLRHAGNM PEKTSAFSVR DFGNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16571629563Homeobox protein Meis2
3k2a_B2e-16571629563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079108.10.0BEL1-like homeodomain protein 2
RefseqXP_012079109.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW801e-176BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A067KJ170.0A0A067KJ17_JATCU; Uncharacterized protein
STRINGcassava4.1_023603m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-151BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]