PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00030.60

Common Name

JCGZ_04337, LOC105633699

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 245aa MW: 25883.7 Da PI: 8.254

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00030.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	22	80	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprC stntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rkn k+s Jcr4S00030.60 22 EPLPCPRCSSTNTKFCYYNNYNLSQPRHFCKGCRRYWTHGGTLRNVPVGGGTRKNSKRS 80 6789***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	14	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-33	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPSESGDKRP ARSQLQPPKL AEPLPCPRCS STNTKFCYYN NYNLSQPRHF CKGCRRYWTH 60 GGTLRNVPVG GGTRKNSKRS RPSTCSTSTS SSSTNTSTST LSTLTHEPDS LPVTTNPDSA 120 LPHVLKSENS DNLNLNENLP LPVNENGNFI SLLNSQQGPG FMGMVGYGAG FGYGLCEVGV 180 GFGGRGNWSY PGMGYVNGGN GGGMEGGNPG CNTWQVSDVE GGGLVDGECF CWPGLAISTA 240 GKSLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071724.1	1e-178	dof zinc finger protein DOF1.6
TrEMBL	A0A067KQJ6	1e-177	A0A067KQJ6_JATCU; Uncharacterized protein
STRING	cassava4.1_023770m	4e-83	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	7e-35	OBF binding protein 1

Link Out ? help Back to Top
Entrez Gene	105633699

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]