PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00043.30

Common Name

JCGZ_22614, LOC105646251

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 250aa MW: 28409.9 Da PI: 4.6925

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00043.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	133	177	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ + L +l+P K++ ae+L+ A +Y+k+Lq Jcr4S00043.30 133 SIAARERRRKITDKTQLLGRLIPGG-----SKMNTAEMLQAAYKYVKYLQ 177 67889****************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.506	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-10	130	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-11	130	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.02E-8	130	180	No hit	No description
SMART	SM00353	5.1E-9	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	133	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSSSFSSSYS DIETAFNQHQ LSLLTGDQFL DYTENNFDFL LNTFVDPFYD SVNFLNYSDN 60 LLLCESPKTY APEDFNLAYP NTKRPKCNNT EDFCCYSYSD YFTQPPTSVQ VNSDDNNGGK 120 KMNMEVRSVS AQSIAARERR RKITDKTQLL GRLIPGGSKM NTAEMLQAAY KYVKYLQAQL 180 GVLRFLFGSS QLKAKDIKEL QILGSASFQE KLYMQEKCLV PNEIALILTN NQDVNSDTSI 240 SDLTLLFNDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087457.2	6e-88	transcription factor bHLH52
TrEMBL	A0A067JZW0	0.0	A0A067JZW0_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	4e-25	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105646251

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]