PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00044.40

Common Name

JCGZ_11638

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 471aa MW: 51492 Da PI: 7.047

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00044.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.2e-40	120	180	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Jcr4S00044.40 120 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKHSA 180 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	113	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	122	178	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MQENNNSNSG SKDSAIKLFG KKIPLKSDSD PPAISCDELP SWERVEEGEA EKTEKDSSAG 60 NVKETSQEDD TEESSDQETN ENPKTPSISE ESAKSKISET EKEQNDPANT TTQEKALKKP 120 DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKHSA 180 SHYRHITISE ALQAARIEAP NGTHNPALKT NGRVLSFGLD TPICDSMASV LNLADQNVLN 240 GATRNGFHNL EGQKKILGSC KGRENGDDCS SASSVTVSNS VEEGGKICQQ EHIMQNVNGF 300 ASPIQCLPGV PWPYPWNSAL PPPVFCPPGY PMSFYPPFGN YGWNIPLLSP QSSSSSTNQK 360 AQSSPNSPTL GKHSRDGDAL KQDDLEKEES PKRKNGCVLV PKTLRIDDPT EAAKSSIWAT 420 LGIKNETYSS GGLFKSFQSK NNEKNHVNKT SPVLHANPAA LSRSINFHES S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MQENNNSNSG SKDSAIKLFG KKIPLKSDSD PPAISCDELP SWERVEEGEA EKTEKDSSAG  60
NVKETSQEDD TEESSDQETN ENPKTPSISE ESAKSKISET EKEQNDPANT TTQEKALKKP  120
DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKHSA  180
SHYRHITISE ALQAARIEAP NGTHNPALKT NGRVLSFGLD TPICDSMASV LNLADQNVLN  240
GATRNGFHNL EGQKKILGSC KGRENGDDCS SASSVTVSNS VEEGGKICQQ EHIMQNVNGF  300
ASPIQCLPGV PWPYPWNSAL PPPVFCPPGY PMSFYPPFGN YGWNIPLLSP QSSSSSTNQK  360
AQSSPNSPTL GKHSRDGDAL KQDDLEKEES PKRKNGCVLV PKTLRIDDPT EAAKSSIWAT  420
LGIKNETYSS GGLFKSFQSK NNEKNHVNKT SPVLHANPAA LSRSINFHES S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ256647	0.0	GQ256647.1 Jatropha curcas Dof1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295662.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-129	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A067K585	0.0	A0A067K585_JATCU; Uncharacterized protein
STRING	cassava4.1_006801m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-113	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]