PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00050.50
Common NameJCGZ_06113, LOC105634827
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 611aa    MW: 70207.9 Da    PI: 5.4349
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00050.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.6e-2260142290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fYn YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  Jcr4S00050.50  60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWRIIEVELEHNHLIS 142
                    9***************99997.66779**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1960142IPR004330FAR1 DNA binding domain
PfamPF105518.7E-22262353IPR018289MULE transposase domain
PROSITE profilePS509669.124495531IPR007527Zinc finger, SWIM-type
PfamPF044348.0E-5497528IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-4506533IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDEVSLNTEP VGEDDADEFE IEGDCAMAEY VGQTGVIQGE NPLPPSVGME FESYEDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMVKF  120
RLMENKRWRI IEVELEHNHL ISPASGKFYK SHKLIGAGTK RTLQLDASDE VQKIRLYRTV  180
IVDAEGNEGV DDDEGQCGNP PHSSQLKLKE GDALAIQNFF CRLQLTDPNF FYVVDLNEKG  240
CMRNLFWADA KSRVSYGYFG DVIVIDITCL KDELEVPLVS FIGVNHHAQS ILLGCGLLAG  300
ETTESYIWLL RAWLTCMLGR PPQTVITDQC INLQTAVADV FPRASHCLHL SRIMQGIPKI  360
LGDLFEFEAI KEALNKTVYD FLRPEEFEAA WEQMIQHHGI RDHKWIQTLY MNHQLEALAD  420
MDSRNSFFIL KSRCYFELQL SKLYTNEILK RFEKEVEGMY ACFSTRQVSV DGPLITYIVK  480
EQVEIEGNCQ ETSDFEVMYN ASEMDILCVC GLFNFRGYLC RHALSILNQN GLEEIPPQYI  540
LTRWRKDVKR SYVLDHRFGG GIDTNNPVHR YDHLYKCFVR VVEEGKKSQD PYKITVQALG  600
EILNKFHLSE N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4817981e-145AM481798.2 Vitis vinifera contig VV78X220380.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073140.20.0LOW QUALITY PROTEIN: uncharacterized protein LOC105634826
TrEMBLA0A067KLN60.0A0A067KLN6_JATCU; Uncharacterized protein
STRINGXP_008228718.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-180FAR1-related sequence 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]