PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00057.310

Common Name

JCGZ_14516

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 194aa MW: 21348.3 Da PI: 8.6723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00057.310	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.5	1.7e-36	8	101	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq e + + Jcr4S00057.310 8 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHLFALQQQAELAYIQ 101 7*********************9989********************************************************98866444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.119	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-35	8	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSSNGGGPCG ACKFLRRKCL KGCIFAPYFD SDQGTAHFAA VHKVFGASNA SKLLLRIPAH 60 KRLDAVVTLC YEALARVRDP VYGCVGHLFA LQQQAELAYI QARLSTLQHL PLPHQSPSQT 120 TSTMASNSNM SMNYDQQQVL QSQYLSTELA SICNKNPLDP ELQADDLQSL ARDFVSKYLP 180 GVRFKPPSSH QSNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	2	94	5	96	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	2	94	5	96	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083562.1	1e-140	LOB domain-containing protein 19
Swissprot	O81322	5e-66	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A067K913	1e-141	A0A067K913_JATCU; Uncharacterized protein
STRING	XP_002511729.1	1e-97	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	2e-64	LOB domain-containing protein 31

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]