PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00071.160

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 769aa MW: 84502.6 Da PI: 6.235

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00071.160	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	322.2	1e-98	407	768	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+++yf+eAL+ l+ ++ + +lpp++ ++ + + ++ a+k+fsevsP+++f ++ Jcr4S00071.160 407 LDQLYKAAELVGTGNFSHAQGILARLNQQLSPIGKPLHRAVFYFKEALQLLLLM-NNNPVTTLPPRSPTPFDIIFKMGAYKVFSEVSPLIQFVNF 500 679**********************************************997.566666899999999********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dl 189 t+Nqa+lea++ ++r+HiiDfdi+ G+QW++++q+L R++gpps++iT+++sp++++ e+ ++++L++fA+e+g++fe +v+ ++le + Jcr4S00071.160 501 TCNQALLEALSDADRIHIIDFDIGFGAQWASFMQELP-RNRGPPSMKITAFASPSTHHPVEILLMRDNLTQFANEIGISFELDVVNFDSLEqnCY 594 ********************************6.799***************************************96665551144 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +l +r +++Ea+aVn+ + + +++ l+ ++L++vk+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k Jcr4S00071.160 595 SLPIFRPNENEAIAVNFPIW--SSSNQPSVLP----SLLRFVKQLSPKIVVSLDRGCDRTDLPFPQHILHALQSYIHLLESLDAV-NVASDAVNK 682 555566666****994..3333455555....5*****************************************665.56999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E++ll+++i++ v + ++ e + +W+ + +aGF+pv++s+++++qa++++++++++g++ve++++ lvl+W++r+L+s+SaWr Jcr4S00071.160 683 IEKFLLQPKIESTVLGRLRA----PEIMPNWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQALLVLCWQRRELISASAWR 768 ***********99998....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.936	380	748	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-96	407	768	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MSGMPFHFQG KGGLDIDIIS GFASICSQQE AWKRKQQEVN SFSSTEPTSV LHMRRSPSPP 60 TSASTLSSSF NGSDGGGNST DNTTANTTTA TEKVVNPVSN ERKDEWATEL QPIPTGLEIV 120 STGERCGLGL EDWENMLSEP NQEQSFLKWI AGDVDESFGL RQLLQGGNSN PQDFEGNGAG 180 GLGIVDQGPG FEAMSSGIAV GVSSIDANLA AFPISGISSA NNNNNGNGKV GAALVSPPSS 240 STALPNYRGV GLGSNNFGSP ATAVSLPTAL PPGMLYHHQI EAQEEKPQIL NPQALMNQQQ 300 LHNPHNQNPN FFLPLSFPQQ ENLLQPQSKR HNSGGMEPMS QMLPKPPFND PGHELLLRKH 360 QQQQQEHLGF PQGMQFLHPP LQQKPLVVKK EEVGAQQQQA QQQHALLDQL YKAAELVGTG 420 NFSHAQGILA RLNQQLSPIG KPLHRAVFYF KEALQLLLLM NNNPVTTLPP RSPTPFDIIF 480 KMGAYKVFSE VSPLIQFVNF TCNQALLEAL SDADRIHIID FDIGFGAQWA SFMQELPRNR 540 GPPSMKITAF ASPSTHHPVE ILLMRDNLTQ FANEIGISFE LDVVNFDSLE QNCYSLPIFR 600 PNENEAIAVN FPIWSSSNQP SVLPSLLRFV KQLSPKIVVS LDRGCDRTDL PFPQHILHAL 660 QSYIHLLESL DAVNVASDAV NKIEKFLLQP KIESTVLGRL RAPEIMPNWK TIFASAGFSP 720 VTFSNFTETQ AECVVKRTPV RGFHVEKRQA LLVLCWQRRE LISASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MSGMPFHFQG KGGLDIDIIS GFASICSQQE AWKRKQQEVN SFSSTEPTSV LHMRRSPSPP  60
TSASTLSSSF NGSDGGGNST DNTTANTTTA TEKVVNPVSN ERKDEWATEL QPIPTGLEIV  120
STGERCGLGL EDWENMLSEP NQEQSFLKWI AGDVDESFGL RQLLQGGNSN PQDFEGNGAG  180
GLGIVDQGPG FEAMSSGIAV GVSSIDANLA AFPISGISSA NNNNNGNGKV GAALVSPPSS  240
STALPNYRGV GLGSNNFGSP ATAVSLPTAL PPGMLYHHQI EAQEEKPQIL NPQALMNQQQ  300
LHNPHNQNPN FFLPLSFPQQ ENLLQPQSKR HNSGGMEPMS QMLPKPPFND PGHELLLRKH  360
QQQQQEHLGF PQGMQFLHPP LQQKPLVVKK EEVGAQQQQA QQQHALLDQL YKAAELVGTG  420
NFSHAQGILA RLNQQLSPIG KPLHRAVFYF KEALQLLLLM NNNPVTTLPP RSPTPFDIIF  480
KMGAYKVFSE VSPLIQFVNF TCNQALLEAL SDADRIHIID FDIGFGAQWA SFMQELPRNR  540
GPPSMKITAF ASPSTHHPVE ILLMRDNLTQ FANEIGISFE LDVVNFDSLE QNCYSLPIFR  600
PNENEAIAVN FPIWSSSNQP SVLPSLLRFV KQLSPKIVVS LDRGCDRTDL PFPQHILHAL  660
QSYIHLLESL DAVNVASDAV NKIEKFLLQP KIESTVLGRL RAPEIMPNWK TIFASAGFSP  720
VTFSNFTETQ AECVVKRTPV RGFHVEKRQA LLVLCWQRRE LISASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-32	389	767	3	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405285	0.0	KM405285.1 Jatropha curcas GRAS14 protein (GRAS14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069957.1	0.0	scarecrow-like protein 22
TrEMBL	A0A067L5T1	0.0	A0A067L5T1_JATCU; GRAS14 protein
STRING	cassava4.1_002034m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-122	GRAS family protein