PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00079.60

Common Name

JCGZ_04322, LOC105633683

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 250aa MW: 27664.7 Da PI: 6.8838

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00079.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60	5e-19	37	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Jcr4S00079.60 37 KGPWSAEEDRILTRLVERHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79***************************9.*********985 PP
2	Myb_DNA-binding	53.8	4.4e-17	91	133	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++ +G++ W+tIar ++ gRt++ +k++w++ Jcr4S00079.60 91 PFSPAEDETILAAHATYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.328	32	87	IPR017930	Myb domain
SuperFamily	SSF46689	1.69E-31	34	130	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-17	36	85	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-18	37	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-25	38	90	IPR009057	Homeodomain-like
CDD	cd00167	1.84E-15	39	81	No hit	No description
SMART	SM00717	2.9E-15	88	136	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.568	89	138	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-23	91	137	IPR009057	Homeodomain-like
CDD	cd00167	7.40E-12	91	134	No hit	No description
Pfam	PF00249	3.2E-14	91	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEAMNVYSTS SSESSSSESS FNGNHTPRNT NKPERIKGPW SAEEDRILTR LVERHGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDETI LAAHATYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRARE QQHQMIMEGN FDNISNNIVE EVTVAVASRS TSQVVVEEEK 180 EDALTALTLA PPGVGVNGGS CSGDGGLAAE KAAESLPAEF WDVMRDVIAR EVRVIYVVTS 240 INESTASGFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-40	33	138	54	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-40	33	138	54	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034624	0.0	KM034624.1 Jatropha curcas clone JcMYB004 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071707.1	1e-170	transcription factor MYB25
Swissprot	O23160	2e-56	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A067KQI3	1e-169	A0A067KQI3_JATCU; MYB family protein
STRING	POPTR_0002s13030.1	1e-114	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-59	myb domain protein 73

Link Out ? help Back to Top
Entrez Gene	105633683

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]