PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00083.140

Common Name

JCGZ_20758, LOC105645961

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 367aa MW: 41572.3 Da PI: 8.144

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00083.140	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	130	153	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L +H + H Jcr4S00083.140 130 YLCRVCGRKFYNNEKLINHFKQiH 153 56*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	7.4E-9	48	131	IPR029060	PIN domain-like
SuperFamily	SSF57667	4.35E-5	129	155	No hit	No description
PROSITE profile	PS50157	12.175	130	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	132	153	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-4	132	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
CDD	cd06167	1.28E-14	147	282	No hit	No description
Pfam	PF01936	4.4E-7	184	282	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	7.4E-9	215	270	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MLLKLRVCFR SIQSRQLNPC LNLFRYCHFD SKLGSNSTNP ITTVTPIEPQ NNVAIFWDLD 60 NKPPNSFPPY EAAFRLKKAA SSFGVVRYMV AYANRHAFSY VPNVVKKQRK ERKLLNQLEN 120 KGLIKPVEPY LCRVCGRKFY NNEKLINHFK QIHEREQQKR LNQIESARGN RRVKLVAKYA 180 MKMQKYKNAV RDVLTPKVGY GLANELKRAG FWVRTVSDKP QAADLALRDH MVDVMDKRKA 240 DCLVLVSDDS DFAGVLKQAK LRCLKTVVVG DINDGALKRV ADAGFSWQEI LMGKAKKEAV 300 SVVGRDDTCD DDDTCDDDDD DGDADDGDCD RECGGFGGIF DEDDVDCKQK EAASAWWELN 360 SDPEANA

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MLLKLRVCFR SIQSRQLNPC LNLFRYCHFD SKLGSNSTNP ITTVTPIEPQ NNVAIFWDLD  60
NKPPNSFPPY EAAFRLKKAA SSFGVVRYMV AYANRHAFSY VPNVVKKQRK ERKLLNQLEN  120
KGLIKPVEPY LCRVCGRKFY NNEKLINHFK QIHEREQQKR LNQIESARGN RRVKLVAKYA  180
MKMQKYKNAV RDVLTPKVGY GLANELKRAG FWVRTVSDKP QAADLALRDH MVDVMDKRKA  240
DCLVLVSDDS DFAGVLKQAK LRCLKTVVVG DINDGALKRV ADAGFSWQEI LMGKAKKEAV  300
SVVGRDDTCD DDDTCDDDDD DGDADDGDCD RECGGFGGIF DEDDVDCKQK EAASAWWELN  360
SDPEANA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087105.1	0.0	uncharacterized protein LOC105645961
Refseq	XP_020539564.1	0.0	uncharacterized protein LOC105645961
TrEMBL	A0A067JNY2	0.0	A0A067JNY2_JATCU; Uncharacterized protein
STRING	XP_002509600.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7500	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-140	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105645961

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]