PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00094.180

Common Name

JCGZ_11607, LOC105640515

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 92aa MW: 10264.7 Da PI: 4.7531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00094.180	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.1e-07	18	58	15	55
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +i + + +L+ llP+ + + ++ ++s + iL++++ YI +Lq Jcr4S00094.180 18 EIIDLILKLQALLPHiN-QRQDSRVSASKILKETCSYIGKLQ 58 5668899******77.8999****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.636	3	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-8	17	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	18	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-8	19	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MSSQSSSSSE ASKITKNEII DLILKLQALL PHINQRQDSR VSASKILKET CSYIGKLQRE 60 VDDLSEKLSQ MLDSMDISNV DVESLISILL QQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080238.1	9e-57	transcription factor PRE5
TrEMBL	A0A067K4V8	2e-55	A0A067K4V8_JATCU; Uncharacterized protein
STRING	XP_002511555.1	7e-31	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF567	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	2e-21	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105640515

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]