PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00098.220
Common NameJCGZ_25812, LOC105646962
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 451aa    MW: 50209.7 Da    PI: 6.8861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00098.220genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19223273256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Jcr4S00098.220 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 273
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.79E-34222282No hitNo description
Gene3DG3DSA:3.30.730.104.7E-32223281IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22223281IPR016177DNA-binding domain
SMARTSM003802.7E-40223286IPR001471AP2/ERF domain
PROSITE profilePS5103222.932223280IPR001471AP2/ERF domain
PfamPF008472.4E-12224273IPR001471AP2/ERF domain
PRINTSPR003679.4E-11224235IPR001471AP2/ERF domain
PRINTSPR003679.4E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAAAKNNTGK SKKGIVDERQ DWELDKGKAN FSFNERQQWK PVFGEVSIAD RPLKKIRSPE  60
RQDPIQFSTS SSSSSSSAYN TTPPFTVSTC SASASSSVSS FSSSASSRLL FPFAFEGCNN  120
QPIQFPHQFK TNPSFPYYRP TIQNQQQMIS FNQSQQQSIT NPLFFAGESA LAHHHQQQQQ  180
LFQYWSDTLN LSPRGRMMMM NRAGPDGRPL FRPPIQPINT TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA LAYDREAFKL RGENARLNFP ELFLNKNKET SITPSTSTIS  300
SPPETPHQTS SPKQESMLPP PPPPPPQMLT PPPPRPQDTP DNDSGMDSSG ATMSDEVQAA  360
AEMSGCSGGE GGSQELVWGD MAEAWFNAIP AGWGPGSPVW DDLDTNSDLL LQSHLPFGNP  420
NQQQQDNMGS ASSSSFSSTF PMKPFFWKDQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21222280160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088313.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A067JVZ70.0A0A067JVZ7_JATCU; Uncharacterized protein
STRINGcassava4.1_006833m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-50ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]