PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00108.20

Common Name

JCGZ_20361, LOC105646019

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26631.7 Da PI: 8.6008

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00108.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.2e-20	13	66	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R++f++eq++ Le +Fe ++ p a+ +++LA++lgL+ rqV++WFqNrRa+ k Jcr4S00108.20 13 NRRRFSDEQIKFLEFMFEAESRPEAQIKQQLANELGLQPRQVSIWFQNRRARLK 66 799*************************************************98 PP
2	HD-ZIP_I/II	106.3	2.3e-34	13	104	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE +Fe+e++ e + K++la+eLglqprqv +WFqnrRAR ktkq+E++y++Lk+++dal+++ e+L++e+++L +lk+ Jcr4S00108.20 13 NRRRFSDEQIKFLEFMFEAESRPEAQIKQQLANELGLQPRQVSIWFQNRRARLKTKQVEREYNRLKASHDALASRLESLKRENQSLLIQLKK 104 689***********************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-18	7	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.929	8	68	IPR001356	Homeobox domain
SMART	SM00389	7.9E-17	10	72	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-17	13	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-18	13	75	IPR009057	Homeodomain-like
CDD	cd00086	1.54E-14	14	69	No hit	No description
PRINTS	PR00031	2.1E-5	39	48	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	43	66	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.1E-5	48	64	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-13	68	107	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDRSMQPTSG NANRRRFSDE QIKFLEFMFE AESRPEAQIK QQLANELGLQ PRQVSIWFQN 60 RRARLKTKQV EREYNRLKAS HDALASRLES LKRENQSLLI QLKKLKNVQA RQQENKICGL 120 EQTESCKEQR PENRGPSSDS KEKLGQLFAG CSCKEETISS KEETRSSKEE TLSSNQDSRN 180 IGCSREGTKI LNHLTESKDG SMTSSDWHRF ASNYLLDEST CSSQWWEFLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	68	RRARLKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087179.1	1e-168	homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A067JZ10	1e-167	A0A067JZ10_JATCU; Uncharacterized protein
STRING	Gorai.008G258900.1	3e-61	(Gossypium raimondii)
STRING	POPTR_0003s14700.1	6e-62	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16057	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-40	homeobox 7

Link Out ? help Back to Top
Entrez Gene	105646019

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]