PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00112.240
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 983aa    MW: 111623 Da    PI: 7.056
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00112.240genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.94.4e-73584284374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl.....fsevsPilk 92 
                     lLl++A+ ++++++++a ++L+    l+s +g+++qR+++yft+AL++rlar  ++++ ++++++++ k  + ++++a  +      +   P+ +
  Jcr4S00112.240  58 LLLAAAHKLHNKQFAEAGKFLNLCDFLSSITGNSVQRIVHYFTKALRERLAR-ETGTVTTIESENKEGKLiHPQQTTACLIpsliaTYLQLPY-T 150
                     79**************************************************.5566666666666544443333333333343343344565.4 PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +++++  q++le +e++++vH iD+ i+ G++   L+qaLa++++ p   l+iT+vg+  ++sk ++ee+gerLa fA++l++pf f++ ++ ++
  Jcr4S00112.240 151 VTQFAGIQTVLEHLESARKVHFIDLAIKTGGHCTILMQALANQNKCPIeLLKITAVGK--TTSKLQMEEVGERLACFAKTLNLPFTFKTAIVYNI 243
                     6788999**********************************9996655499*******..55***************************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea.leyysalfdsleaklprese 280
                     +dl+ e++++++gE++a+ +   l ++  ++ +le     ++++++++ P ++vv e ea+hns  F +rflea l+yysa fd+l++ l r + 
  Jcr4S00112.240 244 KDLKEEMFDLSHGEVVAIYSRTILRNIITQTDCLEC----LMRVLRKTHPCIFVVHEIEANHNSLVFIDRFLEAlLHYYSAHFDCLDVCLERCDP 334
                     ****************************99999988....*********************************9459****************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +ri+ E   l++ei+++va e ++r+ r  +  +Wr+ +++  + + ++s +  +qa++ l++++ ++  +++ +++s++  Wk+ pL+s+SaW+
  Jcr4S00112.240 335 NRIVWETC-LAQEIQDIVAVEDDARIFRDMKIDEWRAYFTRLKMVETEISVSSLSQAQMALKNFAsGKSCTLDRNDKSIITRWKGTPLLSLSAWK 428
                     **999987.********************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.24429407IPR005202Transcription factor GRAS
PfamPF035141.5E-7058428IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.107.7E-8504556IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.106506536IPR002885Pentatricopeptide repeat
PfamPF130411.7E-11506554IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-7509542IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.675562592IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.72593627IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-5595626IPR002885Pentatricopeptide repeat
PfamPF130413.1E-11624672IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.8E-7626656IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8627651IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.026628658IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.791659693IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.7E-8684796IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.728694724IPR002885Pentatricopeptide repeat
PfamPF015350.052699724IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.72725759IPR002885Pentatricopeptide repeat
PfamPF130415.9E-9725771IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.3E-7728761IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.925760795IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.029796826IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.051862896IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MSRVQRLSTG QVMRIARERF IRISSKQQID LSTLQHFFDA AKFDLCCEET KDVELAILLL  60
AAAHKLHNKQ FAEAGKFLNL CDFLSSITGN SVQRIVHYFT KALRERLARE TGTVTTIESE  120
NKEGKLIHPQ QTTACLIPSL IATYLQLPYT VTQFAGIQTV LEHLESARKV HFIDLAIKTG  180
GHCTILMQAL ANQNKCPIEL LKITAVGKTT SKLQMEEVGE RLACFAKTLN LPFTFKTAIV  240
YNIKDLKEEM FDLSHGEVVA IYSRTILRNI ITQTDCLECL MRVLRKTHPC IFVVHEIEAN  300
HNSLVFIDRF LEALLHYYSA HFDCLDVCLE RCDPNRIVWE TCLAQEIQDI VAVEDDARIF  360
RDMKIDEWRA YFTRLKMVET EISVSSLSQA QMALKNFASG KSCTLDRNDK SIITRWKGTP  420
LLSLSAWKFH QQDQSKKSCA KKSKTSNSEK LVLDMSVSSA PFLFSIPDKF TPNSQSRKPD  480
PAVSLLQLYT LDYAQKLFDS INIPRNSFMY NTMIRGYLNC GNPREAFVVY SKMVHECSLY  540
PDDFTFTFVF SACSKFNAVF EGKQAHAQMI KCPVKFGELG DARRVFDEMP ERDVVSWTTM  600
LVGYVNAGFL SEASYLFNEM PERNLVSWTA LINGYLQMGC YSKAFELFKE MQIAKVGMDK  660
ITITTLLSAC ARLGALDQGR WLHTYLNKRG IEVDALLSTA LIDMYSKCGQ IDLAREAFRE  720
ALDKKVFVWN SMLGGLAMNS FGEEAIELFY KMIECGVEPN EITYVNILAA CHHSGLVDVG  780
LHLFNRLVKD KKLQPAMEHY GCLVDLLGRA GLLHDAFRVV ETMPVVADGT IWRALLGSCK  840
LHGNVKLGEQ VGRILIKMEP LNHVNYVLLS NINAMVNRWE IVRELREDMK MKGLTKMPGC  900
SSIELHGVVH EFAARDISHP RSRDIYELLD IMANHVAQDV HGLSICDHPE DTLATEPLRI  960
LWMFMTNHML DESVETKWLV DTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-594678511333PLS9-PPR
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052870.0KM405287.1 Jatropha curcas GRAS38 protein (GRAS38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084061.10.0pentatricopeptide repeat-containing protein At5g66520 isoform X1
RefseqXP_020538683.10.0pentatricopeptide repeat-containing protein At5g66520 isoform X2
RefseqXP_020538684.10.0pentatricopeptide repeat-containing protein At5g66520 isoform X3
TrEMBLA0A067JYN20.0A0A067JYN2_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.19e-45RGA-like 2