PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00117.130
Common NameJCGZ_04441, LOC105633803
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 94aa    MW: 10518.6 Da    PI: 8.8711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00117.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-101559244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +l+ +a + + ++   +W+ +a+ +g g++++++k ++
   Jcr4S00117.130 15 SNWTPKQNKLFEKALAVYDKDtpdRWHNVAKAVG-GKSPEEVKRHY 59
                     58********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.821272IPR017884SANT domain
SMARTSM007175.3E-91365IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-131571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-41563IPR009057Homeodomain-like
CDDcd001676.23E-81663No hitNo description
PfamPF002491.1E-71659IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSYFSSSS HGSSSNWTPK QNKLFEKALA VYDKDTPDRW HNVAKAVGGK SPEEVKRHYD  60
RLVEDLMYIE SGQAPLPNYR ATGSNGRGIG EEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-35885279RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071868.21e-65protein RADIALIS-like 3 isoform X1
SwissprotQ1A1735e-39RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067KQL94e-64A0A067KQL9_JATCU; Uncharacterized protein
STRINGXP_002510401.15e-52(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-39RAD-like 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]