PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00126.140

Common Name

JCGZ_21481, LOC105649589

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HB-other

Protein Properties

Length: 1563aa MW: 176295 Da PI: 5.5186

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00126.140	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	33	88	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk Jcr4S00126.140 33 PKRQMKTPFQLESLEKAYALETYPSEKMRAELSQKLGLSDRQLQMWFCHRRLKDKK 88 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-18	15	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.27E-17	18	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	29	89	IPR001356	Homeobox domain
SMART	SM00389	4.1E-18	31	93	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	33	88	IPR001356	Homeobox domain
CDD	cd00086	2.42E-12	34	83	No hit	No description
PROSITE profile	PS50827	12.922	515	574	IPR018501	DDT domain
SMART	SM00571	3.5E-13	515	574	IPR018501	DDT domain
Pfam	PF02791	7.9E-13	524	571	IPR018501	DDT domain
Pfam	PF15612	9.6E-7	836	877	IPR028942	WHIM1 domain
Pfam	PF15613	3.0E-12	990	1060	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1563 aa Download sequence Send to blast
MESNSEEEIQ NKGNNYNSNN SNIGNSNEGQ SKPKRQMKTP FQLESLEKAY ALETYPSEKM 60 RAELSQKLGL SDRQLQMWFC HRRLKDKKET KETKEPKETK EMKDTPAKKR KLVPLTESPI 120 EEMQAVGPEP GSDYGSGSGS GSGSGSGSSP FMEPRKVGLD DAPMMRRYYE SSPQSVMELR 180 AIACVEAQLG EPLREDGPIL GMEFDPLPPD AFGAPIAAMV EQQKRSMHPY DGKGYERRDA 240 KSSKASARAF HEYQLLHDQS DTRCDAYGQG QSPYHDTSVD NLRGRASFVH GDESLARVHG 300 VQGQGSRVRL SSQLDKKGHI FSSPSKDDDY LLHHDSFANN RVNTPSISHQ IMGSENPDIF 360 PDAQIFHSDT NLRMEKKRKT DDTRNSREVE ANESRIRKEL EKQDQLRRKS EERRRKEMER 420 IDRERRKEEE RLIRERQREE ERSLREQKRE LERREKFLQR EYLRAEKKRQ KEELRREKEA 480 VKRQAAIEKA TARRIAKESL DLIEDEQLEL MELAAASKGL NSIVWRFFIT FADVLGLWPF 540 TLDEFVQAFH DYDSRLLGEV HVALLKLVIK DIEDVARTPV TGLGTNQYCT ANPEGGHPQI 600 VEGAYTWGFD IRNWQRHLNP LTWPEIFRQL ALSAGFGPRL KKRSATWTQL GENNEVKGCK 660 DTISTLRNGS AAENAFALMR ERGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADKIQDPADA EAILSSARKK IRIFENGLLG GEDGDDVERD EDSEGDVDED PEVDDLAATP 780 FGANRIANHS NGANTCSGNR KDSVCNDTLL VAENELDKEH PSVPLNSSKE SMTPSESWIQ 840 GLVEGEYAHL SVEERLGALV ALVGIANEGN SIRAVLEDRL EAANALKKQI AEMQVISSAM 900 EGSQSPLPLV DSKNKEVSPS TAEDQKLLVA AENIQNHLNS VSIEKTLVVQ DPSMNPDNFS 960 GQQHGYASKR SRSQLKAYIG HIAEETYVYR SLPLGQDRRR NRYWQFVASA SRNDPCSGRI 1020 FVELHDGNWR LIDSIEAFDA LLSSLDTRGI RESHLRMKLV NHIPVLMAQL GISSPCSIVC 1080 GSNSDLFDTS SLFRIELGRN EMEKKGALKR YQDFQKWIWK ECFNCLTLRA MKYGKKRCTP 1140 LLATCDFCFD SYLTEDVHCP SCHQTFSAAN KIFNFLEHGV QCEEKVKLNP GVSVPPEALE 1200 SFWTDNYRKS WATKLNMSSS MEEFQQILTV LESAIKRDCL SANFEMTKEL LGSSPSSQTA 1260 LYGSSDLGSV LVLPWIPKTT AALAMRLFEL DASITYVQHE KAEPSEDKPV KLYMKLPSRC 1320 SPLKSKEIEL KELKHDYVKD ENFNDLRSKR NNNKRGRGGR DQGYGTKLQR RIPGLKSDPS 1380 KRNARENERL NLGQKQGRRT NAQASGRGRR TVRKRRAEMM VDDDTLIGRM TNSVSHSKYG 1440 GSLRNFDDED WGIEKARMDA DVDDADNSNS VEAAESDDNV EAEGYEQENW EQSYIGASNR 1500 WNQNSVEASD DDGDASGDDN GIEDMGVEDS EGEIEISEGS DGLANKMDND EASDSAVSDD 1560 YSD

Sequence ? help Back to Top

Protein Sequence Length: 1563 aa Download sequence Send to blast

MESNSEEEIQ NKGNNYNSNN SNIGNSNEGQ SKPKRQMKTP FQLESLEKAY ALETYPSEKM  60
RAELSQKLGL SDRQLQMWFC HRRLKDKKET KETKEPKETK EMKDTPAKKR KLVPLTESPI  120
EEMQAVGPEP GSDYGSGSGS GSGSGSGSSP FMEPRKVGLD DAPMMRRYYE SSPQSVMELR  180
AIACVEAQLG EPLREDGPIL GMEFDPLPPD AFGAPIAAMV EQQKRSMHPY DGKGYERRDA  240
KSSKASARAF HEYQLLHDQS DTRCDAYGQG QSPYHDTSVD NLRGRASFVH GDESLARVHG  300
VQGQGSRVRL SSQLDKKGHI FSSPSKDDDY LLHHDSFANN RVNTPSISHQ IMGSENPDIF  360
PDAQIFHSDT NLRMEKKRKT DDTRNSREVE ANESRIRKEL EKQDQLRRKS EERRRKEMER  420
IDRERRKEEE RLIRERQREE ERSLREQKRE LERREKFLQR EYLRAEKKRQ KEELRREKEA  480
VKRQAAIEKA TARRIAKESL DLIEDEQLEL MELAAASKGL NSIVWRFFIT FADVLGLWPF  540
TLDEFVQAFH DYDSRLLGEV HVALLKLVIK DIEDVARTPV TGLGTNQYCT ANPEGGHPQI  600
VEGAYTWGFD IRNWQRHLNP LTWPEIFRQL ALSAGFGPRL KKRSATWTQL GENNEVKGCK  660
DTISTLRNGS AAENAFALMR ERGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADKIQDPADA EAILSSARKK IRIFENGLLG GEDGDDVERD EDSEGDVDED PEVDDLAATP  780
FGANRIANHS NGANTCSGNR KDSVCNDTLL VAENELDKEH PSVPLNSSKE SMTPSESWIQ  840
GLVEGEYAHL SVEERLGALV ALVGIANEGN SIRAVLEDRL EAANALKKQI AEMQVISSAM  900
EGSQSPLPLV DSKNKEVSPS TAEDQKLLVA AENIQNHLNS VSIEKTLVVQ DPSMNPDNFS  960
GQQHGYASKR SRSQLKAYIG HIAEETYVYR SLPLGQDRRR NRYWQFVASA SRNDPCSGRI  1020
FVELHDGNWR LIDSIEAFDA LLSSLDTRGI RESHLRMKLV NHIPVLMAQL GISSPCSIVC  1080
GSNSDLFDTS SLFRIELGRN EMEKKGALKR YQDFQKWIWK ECFNCLTLRA MKYGKKRCTP  1140
LLATCDFCFD SYLTEDVHCP SCHQTFSAAN KIFNFLEHGV QCEEKVKLNP GVSVPPEALE  1200
SFWTDNYRKS WATKLNMSSS MEEFQQILTV LESAIKRDCL SANFEMTKEL LGSSPSSQTA  1260
LYGSSDLGSV LVLPWIPKTT AALAMRLFEL DASITYVQHE KAEPSEDKPV KLYMKLPSRC  1320
SPLKSKEIEL KELKHDYVKD ENFNDLRSKR NNNKRGRGGR DQGYGTKLQR RIPGLKSDPS  1380
KRNARENERL NLGQKQGRRT NAQASGRGRR TVRKRRAEMM VDDDTLIGRM TNSVSHSKYG  1440
GSLRNFDDED WGIEKARMDA DVDDADNSNS VEAAESDDNV EAEGYEQENW EQSYIGASNR  1500
WNQNSVEASD DDGDASGDDN GIEDMGVEDS EGEIEISEGS DGLANKMDND EASDSAVSDD  1560
YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	88	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091668.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A067JLX5	0.0	A0A067JLX5_JATCU; Uncharacterized protein
STRING	cassava4.1_000118m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Entrez Gene	105649589

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]