PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00126.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 240aa    MW: 26176.5 Da    PI: 9.7041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00126.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202777256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Jcr4S00126.30 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 77
                   69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.08E-192784No hitNo description
PfamPF008474.8E-142776IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942784IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-222785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-322785IPR001471AP2/ERF domain
SMARTSM003806.6E-392790IPR001471AP2/ERF domain
PRINTSPR003674.9E-112839IPR001471AP2/ERF domain
PRINTSPR003674.9E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAPREKTAAV KPNGSCGGGA AAVKEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGAKAK TNFPLASENV NKNIILNKKI DTGANNPSPS PSSTVESSSR  120
ETPAMMMESS SPLDLNLGPS AAVRFPFQPI PAVGGVFTPP VVNHQHVLYF DAMMKSQYQR  180
LFFDQQHHLH HQAIFSAVNG GGVQSDSDSS SVIDLNQQEI NPPRRNLDFD LNLPPKPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212485264ATERF1
3gcc_A2e-212485264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091652.11e-179ethylene-responsive transcription factor 4
TrEMBLA0A1L6CAZ31e-114A0A1L6CAZ3_9ROSI; AP2/ERF domain-containing transcription factor
STRINGcassava4.1_014721m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-27erf domain protein 9