PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00148.10

Common Name

JCGZ_01234, LOC105648776

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 260aa MW: 28386.7 Da PI: 5.1004

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00148.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.4e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Jcr4S00148.10 13 KGSWSPQEDANLIKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 58 799***************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ Jcr4S00148.10 67 PFSPAEDAIIVQAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.289	8	63	IPR017930	Myb domain
SuperFamily	SSF46689	3.33E-30	10	106	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-16	12	61	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-18	13	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-24	14	66	IPR009057	Homeodomain-like
CDD	cd00167	1.16E-15	15	57	No hit	No description
PROSITE profile	PS51294	21.985	64	114	IPR017930	Myb domain
SMART	SM00717	9.4E-15	64	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.30E-12	67	110	No hit	No description
Pfam	PF00249	1.7E-14	67	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-23	67	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGSFSGCGAD RIKGSWSPQE DANLIKLVEQ HGPRNWSLIS TGIPGRSGKS CRLRWCNQLS 60 PEVQHRPFSP AEDAIIVQAH AIHGNKWATI ARLLPGRTDN AIKNHWNSTL RRKRAAELSS 120 ASSEANSVMK RPCLDVSTES GSESGVKRQC LGAPPEDSSF DGEAGIVEPE TSLTLSPPGD 180 GFVRTEVGEK VKEVAVKGGE QDVDRQMVGE EEEEEEETCG LQIEETCLLT IMQRMIATEV 240 RSYIDRLRSK NGFAGPNADQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-39	12	113	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-39	12	113	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-39	12	113	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-39	12	113	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-39	12	113	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034625	0.0	KM034625.1 Jatropha curcas clone JcMYB005 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090668.1	0.0	transcription factor MYB25
Swissprot	O23160	5e-55	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A067LKB3	0.0	A0A067LKB3_JATCU; MYB family protein
STRING	cassava4.1_022961m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-55	myb domain protein 77

Link Out ? help Back to Top
Entrez Gene	105648776

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]