PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00148.50

Common Name

JCGZ_25754, LOC105646905

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 364aa MW: 41246.4 Da PI: 7.9885

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00148.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.5e-09	130	151	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f+r G C++Gd+C FaHg Jcr4S00148.50 130 AVCPEFRR-GGCSRGDTCEFAHG 151 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	126	152	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	127	153	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.6E-6	130	153	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-7	130	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4	161	184	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MSTVCAEQHK LYPSHQLFSC KKPFKDLEIP PRKLFSKKIL QENPDMSPFD STLRKFILFN 60 DSNNGDHSNS HEKLSNEDLD PYSSDHFRMY EFKVRRCTRS RSHDWTDCPF AHPGEKARRR 120 DPRKYHYSGA VCPEFRRGGC SRGDTCEFAH GVFECWLHPS RYRTEACKEG KNCKRKICFF 180 AHSPQQLRIL PEVSSDTIKY DKSLASPCSS LNHGHCCCLS CHSVISSPTS TLLGMSHISP 240 PLSPSWSPSP PLSPVKCHGF SRYSDRLSKP RSGLISYKDV LTELMSSLEA MNFNDASLSE 300 DQQQQTQMIL SPSTSNPSGL SRNFWNGDCS RNESIDEKIN NNNGGGLVGN LDHPDLGWVN 360 ELLM

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MSTVCAEQHK LYPSHQLFSC KKPFKDLEIP PRKLFSKKIL QENPDMSPFD STLRKFILFN  60
DSNNGDHSNS HEKLSNEDLD PYSSDHFRMY EFKVRRCTRS RSHDWTDCPF AHPGEKARRR  120
DPRKYHYSGA VCPEFRRGGC SRGDTCEFAH GVFECWLHPS RYRTEACKEG KNCKRKICFF  180
AHSPQQLRIL PEVSSDTIKY DKSLASPCSS LNHGHCCCLS CHSVISSPTS TLLGMSHISP  240
PLSPSWSPSP PLSPVKCHGF SRYSDRLSKP RSGLISYKDV LTELMSSLEA MNFNDASLSE  300
DQQQQTQMIL SPSTSNPSGL SRNFWNGDCS RNESIDEKIN NNNGGGLVGN LDHPDLGWVN  360
ELLM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088238.1	0.0	zinc finger CCCH domain-containing protein 2
Swissprot	Q9ZWA1	2e-82	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A067JJM3	0.0	A0A067JJM3_JATCU; Uncharacterized protein
STRING	cassava4.1_008973m	1e-161	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6261	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	2e-83	C3H family protein

Link Out ? help Back to Top
Entrez Gene	105646905

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]