PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00150.190
Common NameJCGZ_20639
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 303aa    MW: 33297.5 Da    PI: 5.9395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00150.190genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F+kg+k ll++
  Jcr4S00150.190  30 FLTKTYQLVDDPSVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFRKGEKGLLRD 115
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Jcr4S00150.190 116 IQRRKI 121
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-5926119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3527119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-213053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-216880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-218193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.7E-4183208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMPLPVEQTG ESTAAGGGAG DSQRSLPTPF LTKTYQLVDD PSVDDLISWN EDGSTFIVWR  60
PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANDYFRKGEK GLLRDIQRRK  120
ISPTVATAAT TATVTVAAIP AVARTVSPTT SGDEQVISSN SSPVATQVAT PLLRTTSCTT  180
TPELLEENER LRKVNTQLSQ ELTQLKGLCN NILALMTNYA SGQVDSHNNL AEGKPLDLLP  240
AMKMVAQREE TDMAISGGAT PATTAAEEAM IPRLFGVSIG AKRMRKDEEE QKQANNRQQS  300
QEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251711919129Heat shock factor protein 1
5d5v_B3e-251711919129Heat shock factor protein 1
5d5v_D3e-251711919129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086969.10.0heat stress transcription factor B-2b
RefseqXP_012086971.10.0heat stress transcription factor B-2b
RefseqXP_012086972.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-101HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A067JRM80.0A0A067JRM8_JATCU; Uncharacterized protein
STRINGcassava4.1_027702m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-87HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]