PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00156.90

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 119aa MW: 12325 Da PI: 11.156

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00156.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	52.1	2.7e-16	41	75	2	36
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLq 36 a+kk +++++h+kv+gR+RR+R+++ caar+F+L+ Jcr4S00156.90 41 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLT 75 78********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-12	47	75	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MSNSDSAANN GGGGGGGGGV TNGAIIDSQR QQPPGTNGAL AVKKPPSKDR HSKVDGRGRR 60 IRMPIICAAR VFQLTPPNEN GHFVRVALFA PVSTSSLIEL ASVLLWSPAA GYLGYRSLQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021665449.1	5e-37	transcription factor TCP21-like
Swissprot	Q9FTA2	2e-19	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A067K829	1e-69	A0A067K829_JATCU; Uncharacterized protein
STRING	cassava4.1_013743m	8e-34	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-21	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]