PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00161.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 239aa MW: 25473.1 Da PI: 10.7342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00161.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.6	1e-13	202	227	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Jcr4S00161.10 202 WKTRICNKWELTGYCPFGNKCHFAHG 227 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.5E-15	197	228	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-9	198	227	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.7E-9	201	228	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.347	201	229	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-11	202	227	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MWDLGGYPNK PPLQPRTTQI VTSPPGIICP PSCTAATTLR DTPPDLLLSG RLSTQGTTCR 60 SSSGLGPVVT TISQQTSPPT KDHTNRDLPS RDNLPTILYR RYNFAGHAAR TPLVGKTFDT 120 RHHLQIFFSV LVLLLQRHTE IFLALRSHAR SKPWALIPLV GTARTIQPRI RGGGGGGGGS 180 AAAGGAGGGN GAGAGNIKPS NWKTRICNKW ELTGYCPFGN KCHFAHGSAG MSYQLLIVD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034739	8e-74	KM034739.1 Jatropha curcas clone JcMYB120 MYB family protein gene, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-16	C3H family protein