PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00170.120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 237aa    MW: 26858.4 Da    PI: 8.372
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00170.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.1e-081882202254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  Jcr4S00170.120 188 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 220
                     59*****************************87 PP
2ELK29.81.3e-10141162122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Jcr4S00170.120 141 ELKHELKQGYKEKIVDIREEIL 162
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.8E-133584IPR005541KNOX2
PfamPF037916.8E-114583IPR005541KNOX2
PROSITE profilePS512139.969141161IPR005539ELK domain
PfamPF037894.7E-7141162IPR005539ELK domain
SMARTSM011886.1E-4141162IPR005539ELK domain
PROSITE profilePS5007111.677161224IPR001356Homeobox domain
SuperFamilySSF466893.51E-16163225IPR009057Homeodomain-like
SMARTSM003898.4E-11163228IPR001356Homeobox domain
CDDcd000861.00E-11164225No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25168225IPR009057Homeodomain-like
PfamPF059205.2E-18181220IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPSHKYNGN SCWGGLICFL NKSPNKMSLS NFCLGGLEKS PSKTHYVILL CSFKDQLQQH  60
VRVHAMEAVM ACWELEQSLQ SLTGASLAEG TGATMSDDDD DQADSDTNLY DGSLDGSDCM  120
GFGPLVPTET ERSLMEHVRK ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSLLKA  180
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNSSGAT LKSKRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217236RKRNWHSNSSGATLKSKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081099.11e-142homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-118KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A067K1T01e-140A0A067K1T0_JATCU; Uncharacterized protein
STRINGVIT_11s0118g00800.t011e-125(Vitis vinifera)
STRINGGSMUA_Achr7P05170_0011e-125(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-113KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]